三角帆蚌β-肌动蛋白基因的cDNA全长克隆及表达分析

Cloning and expression analysis of β-actin gene from Hypriopsis cumingii

  • 摘要: 采用RT-PCR和快速扩增cDNA末端(rapid amplification of cDNA ends,RACE)技术首次克隆了三角帆蚌β-肌动蛋白基因的cDNA全序列,该序列全长为1 483 bp,由长92 bp的5′非翻译区(untranslated region,UTR),257 bp的3′非翻译区,和1 134 bp的开放阅读框(open reading frame,ORF)组成。阅读框共编码377个氨基酸,推算的分子量约为41.9 ku,理论等电点为5.3。三角帆蚌β-actin氨基酸序列中Met178,Ser305,Ser321,Pro325,Val331,Pro346等6个氨基酸残基具有特异性,此外还发现3个特殊的氨基酸残基位点以及2个软体动物特有的氨基酸残基。三角帆蚌β-actin氨基酸序列与软体动物、节肢动物、脊椎动物的相似性高达98%~99%。NJ法系统进化分析显示三角帆蚌首先与软体动物聚在一起,然后与节肢动物聚在一起,再依次与鱼类、两栖类、哺乳类聚在一起。RT-PCR显示β-actin基因在外套膜、血液、肝、肾、胃、肠、鳃、斧足共8个组织的表达基本一致,具有良好的稳定性。

     

    Abstract: A 1 438 bp full length cDNA sequence of β-actin gene from Hypriopsis cumingii was obtained with RT-PCR and rapid amplification of cDNA ends(RACE)technique.It consists of a 92 bp 5′ untranslated region(UTR), a 1 134 bp open reading frame(ORF)and a 257 bp 3′UTR.The translated protein is composed of 377 amino acids,with 41.9 ku molecular weight,and its calculated isoelectric point was 5.3.The amino acid sequence of β-actin in H.cumingii has six specific amino acid residues:Met178,Ser305,Ser321,Pro325,Val331 and Pro346,respectively.In addition,three other particular base sites of amino acid residues were found in these sequences.Similarly,two characteristic amino acid residues of some mollusks were obtained.The amino acids sequence of β-actin in H.cumingiishared the high similarity with Molluscs,Arthropod and Vertebrate animals(98%-99%).Neighbor-Joining(NJ)tree suggested that H.cumingii clustered with Mollusca firstly,and then clustered with Arthropoda,finally clustered with Fish,Amphibians,Mammals. Semi-quantitative RT-PCR analyses showed that the expression level of β-actin gene in H.cumingii was stable in eight tissues:mantle,blood,liver,kidney,stomach,gut,gill and abdominal foot.

     

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