基于全基因组测序分析大口黑鲈鰤鱼诺卡鰤诺卡氏菌致病性和耐药性

Analysis of pathogenicity and drug resistance of Nocardia seriolae from Micropterus salmoides based on whole genome sequencing

  • 摘要:
    目的 为阐明荆州市某养殖基地患病大口黑鲈以体表溃疡出血、内脏表面出现白色结节为主要症状的致病病因。
    方法 本研究从患病大口黑鲈出现白色结节的脏器中分离优势菌,结合菌落形态、革兰氏染色、生理生化特征、16S rRNA基因、secA1基因和全基因组测序分析等方法对分离菌株进行鉴定。采用毒力基因筛查、回归感染试验和组织病理切片等方法分析分离菌株的致病性;结合生物被膜形成能力检测、耐药基因筛查和药物敏感性试验,分析分离菌株的耐药性。
    结果 经鉴定,从患病鱼中分离到的优势菌为鰤诺卡氏菌,命名为NS01。分离株NS01的比较基因组学分析发现,大口黑鲈鰤诺卡氏菌NS01与海水鱼源鰤诺卡氏菌的遗传距离较淡水鱼源鰤诺卡氏菌更近,相似性更高。分离菌株NS01在大口黑鲈上半数致死浓度(LD50)为7.5×107 CFU/mL,其携带pupmigmce 1A和gapA 4种毒力基因。分离菌株具有中等生物被膜形成能力;对庆大霉素、新霉素和氯霉素等8种药物敏感,对青霉素、头孢唑林和诺氟沙星等11种药物耐药。耐药基因分析发现,分离菌株NS01与海水鱼源诺卡氏菌UTF1株、KH-11株、VT-45株和PY-31株等菌株在耐药基因水平上具有较近的亲缘关系。
    结论 本研究从患病大口黑鲈出现白色结节的脏器中成功分离到一株鰤诺卡氏菌,对该菌的致病性和耐药性进行系统分析,并通过全基因组测序方法深入揭示分离菌株的进化信息,研究结果为探究鰤诺卡氏菌致病机制和耐药机理提供理论依据和数据支持。

     

    Abstract: Micropterus salmoides is a crucial economic freshwater fish species in China. In recent years, the continuous expansion of its farming scale has been accompanied by increasingly prominent disease issues, which have inflicted significant economic losses on the aquaculture industry. In order to clarify the pathogeny of diseased M. salmoides in a culture base in Jingzhou, the main symptoms are bleeding of body surface ulcer and appearance of white nodules on the visceral surface.In this study, a dominant bacterium was isolated from the organs of diseased M. salmoides with white nodules. The isolated strain was identified through a combination of colony morphology, Gram staining, physiological and biochemical characteristics, as well as sequence analyses of the 16S rRNA gene, secA1 gene, and whole-genome sequencing. The pathogenicity of the isolated strain was assessed through virulence gene screening, experimental challenge, and histopathological examination. Its antimicrobial resistance was evaluated based on biofilm formation ability, resistance gene screening, and antimicrobial susceptibility testing.The dominant bacterium isolated from the diseased fish was identified as N. seriolae and designated as strain NS01. Comparative genomic analysis of the isolate NS01 revealed that N. seriolae NS01 from M. salmoides is more closely related to, and shares higher similarity with, strains originating from marine fish than to those from freshwater fish.The isolated strain NS01 showed a median lethal concentration (LD50) of 7.5×107 CFU/mL in M. salmoides, with the presence of four virulence genes: pup, mig, mce 1A, and gapA. The isolated strain NS01 exhibited a moderate capacity for biofilm formation. It demonstrated susceptibility to eight antimicrobial agents, including gentamicin, neomycin, and chloramphenicol, while showing resistance to eleven others, such as penicillin, cefazolin, and norfloxacin. Analysis of resistance genes revealed that the isolated strain NS01 is closely related to several N. seriolae strains of marine fish origin, such as UTF1, KH-11, VT-45, and PY-31, at the genetic level of antimicrobial resistance.This study successfully isolated a strain of N. seriolae from the nodule-afflicted organs of diseased M. salmoides. The pathogenicity and antimicrobial resistance of this isolate were systematically analyzed, and its evolutionary history was elucidated through whole-genome sequencing. These findings provide a theoretical foundation and data support for investigating the pathogenic and resistance mechanisms of N. seriolae.

     

/

返回文章
返回