长牡蛎chitinase家族成员鉴定及Cgamcase-1在海洋酸化下的表达特征

Identification of chitinase family members in the Crassostrea gigas and the expression patterns of Cgamcase-1 under ocean acidification

  • 摘要:
    目的 鉴定长牡蛎中几丁质酶家族成员并探究其酸化响应模式。
    方法 通过生物信息学方法对长牡蛎几丁质酶家族成员进行鉴定,并分析其表达特征。利用实时荧光定量 PCR (RT-qPCR)和原位杂交技术对家族成员Cgamcase-1在外套膜组织中的分布及其对酸化胁迫的响应模式进行检测。
    结果 从长牡蛎基因组中鉴定了11个几丁质酶家族基因成员,均含有Glyco-18结构域,部分成员还含有几丁质结合结构域ChtBD2,主要分布于第2、5、6及7号染色体上。长牡蛎几丁质酶家族基因明确分为几丁质内切酶与几丁质外切酶2个分支。几丁质酶家族成员在长牡蛎幼虫的各个发育阶段均有表达,其中5个基因的表达水平随着幼虫发育而逐渐升高。大部分几丁质酶家族基因在成体长牡蛎外套膜中的表达水平高于其他组织,且在外套膜不同褶皱中表达水平有所不同。其中酸性哺乳动物几丁质酶Cgamcase-1在外套膜表达量较高,在外套膜缘膜区的外褶 (OF) 中表达量最高。酸化胁迫3、7 及14 d后,外套膜中Cgamcase-1 mRNA表达量显著高于对照组,分别是对照组的3.010、4.557和 4.129倍。酸化胁迫7 d后,Cgamcase-1在OF中mRNA表达量显著高于对照组,是对照组的3.598倍。原位杂交结果显示,Cgamcase-1探针的阳性信号主要集中于外套膜OF的外上皮细胞区域,且在酸化胁迫7 d后阳性信号强度显著增加,14及28 d后阳性信号强度显著下降。
    结论 长牡蛎几丁质酶家族基因可能参与幼虫发育及成体壳形成,其中Cgamcase-1在外套膜OF中参与几丁质分解并响应海洋酸化胁迫。本研究为深入理解几丁质酶在长牡蛎壳形成过程中的作用及其在海洋酸化胁迫下的响应机制提供了重要的理论依据和参考。

     

    Abstract: Chitinase, as a crucial enzyme for the degradation of chitin, is involved in the construction of the chitin framework during the process of shell formation. In order to identify the members of the chitinase gene family in Crassostrea gigas and investigate their response to acidification, bioinformatic methods were employed to identify the chitinase family members and analyze their expression patterns. Eleven members of the chitinase family were identified from the C. gigas genome. All gene members contained the Glyco-18 domain, and some genes also contained the chitin-binding domain ChtBD2. These genes were predominantly located on chromosome 2, 5, 6, and 7. In the C. gigas, the chitinase family genes were clearly divided into two branches which were endochitinases and exochitinases. The chitinase family expressed across all developmental stages of the C. gigas larvae. With the development of larva, the expression level of five genes increased gradually. The expression levels of most chitinase family genes were higher in the mantle compared to other tissues. The acidic mammalian chitinase (Cgamcase-1) exhibited high expression level in the mantle, with the highest expression level in the outer fold (OF). The expression patterns of Cgamcase-1 in response to acidification were analyzed. After 3, 7, and 14 days of acidification stress, the mRNA expression of Cgamcase-1 in the mantle was 3.010-fold (P < 0.05), 4.557-fold (P < 0.001) and 4.129-fold (P < 0.001) of that in the control group, respectively. After 7 days of acidification stress, the mRNA expression of Cgamcase-1 in OF was 3.598-fold of that in the control group (P < 0.05). In situ hybridization results revealed that the positive signals for the Cgamcase-1 probe were primarily concentrated in the epithelial cell region of the outer fold, and the intensity of the positive signals significantly increased after 7 days of acidification stress, while it significantly decreased after 14 and 28 days. The study suggested that chitinase family genes might be involved in the process of larval development and adult shell formation. Cgamcase-1 participated in chitin degradation and responding to ocean acidification. This research provided important theoretical evidence and reference for understanding the role of chitinase in the shell formation process of the C. gigas and their response mechanisms under ocean acidification.

     

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