中国淡水主要养殖鱼类基因组育种研究现状与展望

Research status and prospect of genome breeding in China’s important cultured freshwater fish

  • 摘要: 鱼类是中国水产养殖的核心组成部分,中国渔业统计年鉴列入的25种淡水主要养殖鱼类产量占据了2024年水产养殖总量的半壁江山,为保障国民优质蛋白稳定供给作出了不可替代的突出贡献,在调节人类膳食结构和满足营养需求方面发挥了重要作用,其产业规模已然处于全球领先地位。伴随着基因组测序方法日新月异的快速发展和基因组育种技术日益完善的拓展应用,有力推动了淡水主要养殖鱼类新种质的创制和新品系的培育,夯实了淡水养殖在中国水产品持续供给中的底盘性定位,成为托起中国人民“舌尖幸福”的前沿路径。本文综述了淡水主要养殖鱼类基因组资源挖掘利用的现实状况,介绍了21种淡水主要养殖鱼类的基因组大小、蛋白编码基因数量和基因组结构特征等基础生物学信息。瞄准无肌间刺、快速生长、单性、体色改良和抗病等五类备受关注的经济性状,总结了利用CRISPR-Cas9技术对不同淡水主要养殖鱼类基因组进行编辑的目标基因与操作方法,创制出具有优异经济性状新种质的突破性研究进展。聚焦全基因组选择育种技术在淡水主要养殖鱼类新品系培育的现状,分别以鲤生长和抗病性状、虹鳟抗病性状、尼罗罗非鱼和斑点叉尾鮰生长性状的遗传改良作为典型范例,回顾了该项技术应用于4种鱼类选育过程中取得的主要成效和遗传进展。从深入推进淡水主要养殖鱼类基因组育种研究的视角提出了基因组资源开发与应用、基因组编辑技术迭代与升级、全基因组选择育种技术革新与优化、基因组编辑创制新种质综合性能测定与评价、基因组育成新品系产业化配套体系构建与推广等5项未来研究的重点方向,以期为提高淡水主要养殖鱼类基因组育种研究的深度和广度,加速性状优异新品种的选育进程及应用成效,助推中国淡水养殖产业高质量发展贡献实用性的新技术与新方法。

     

    Abstract: A wide variety of aquatic types such as fish, shrimp, shellfish and algae have significantly enriched the structure of aquaculture in China, thereby supporting the diversified demands of the people for high-quality and nutritionally rich aquatic products. Fish constitute the cornerstone of China's aquaculture industry, and the production of the 25 major freshwater cultured fish species listed in the China Fisheries Statistical Yearbook accounted for nearly half of the total aquaculture output in 2024, making an irreplaceable and outstanding contribution to ensure a stable supply of high-quality protein for the nation. It also plays a vital role in regulating human dietary structure and fulfilling nutritional needs, whose industrial scale has already held a leading position globally. In China, freshwater cultured fish are broadly categorized into two groups: commodity species and specialty species. Among these, commodity species account for the majority of total production. But specialty species are valued in the market for their exceptional tenderness and superior flavor profile. The rapid advancement of genome sequencing methods and the increasingly perfect application of genomic breeding technologies have strongly propelled the creation of new germplasm and the cultivation of new strains in major cultured freshwater fish, which solidifies the foundational role of freshwater aquaculture in ensuring the sustained supply of aquatic products in China, establishing a cutting-edge pathway to elevate the "gastronomic satisfaction" of the Chinese people. This article comprehensively reviews the current status of genomic resource exploration and utilization for major cultured freshwater fish, introduces fundamental biological information including the genome size, number of protein coding genes and genomic structural characteristics for 21 key freshwater cultured fish species. Targeting five high-profile economic traits, namely intermuscular bone-free, rapid growth, single sex, body color improvement, and disease resistance, the article summarizes the target genes and operational methodologies for genome editing using CRISPR-Cas9 technology across different major cultured freshwater fish species as well as reviews breakthrough research progress in creating new germplasm with superior economic traits. Focusing on the current application of genomic selection breeding technology in cultivating new strains in major cultured freshwater fish, this article retrospect its main effects and genetic gains through 4 fish species breeding course, in which, typical case contains genetic improvement of growth and disease resistance traits in Cyprinus carpio, disease resistance trait in Oncorhynchus mykiss, growth trait in Oreochromis niloticus and Ictalurus punctatus, respectively. From the perspective of further promoting genomic breeding research for major cultured freshwater fish, the paper proposes 5 key research direction in future, which including the development and application of genomic resources, the iteration and upgrading of genome editing technology, the innovation and optimization of genomic selection breeding technology, the testing and evaluation of comprehensive performance in new germplasm created via genome editing, and the building and popularizing of industrialization support system for genome breeding new strains. In summary, it is aimed that the information of this review could enhance the depth and breadth of genomic breeding research for China's major cultured freshwater fish, accelerate the breeding process and application effect of new varieties with superior economic traits, and contribute practical new technology and methodology to foster the high-quality development of the freshwater aquaculture industry in China.

     

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