尼罗罗非鱼、萨罗罗非鱼及其杂交子代胰岛素样生长因子(IGF-Ⅰb)基因3′cDNA末端克隆及序列分析

Cloning and sequencing of IGF-Ⅰb 3′cDNA in Oreochromis niloticus, Sarotherodon melanotheron and their hybrid

  • 摘要: 为探讨尼罗罗非鱼、萨罗罗非鱼及其杂交子代(Oreochromis niloticus♀× Sarotherodon melanotheron)IGF-Ⅰ基因结构差异,研究IGF-Ⅰ基因与此3种基因型罗非鱼耐盐性能差异之间的关系,通过3′-RACE的方法,从鳃的总RNA分别获得其IGF-Ⅰb基因的部分cDNA序列,长度分别为1 076 bp、1 075 bp和1 079 bp,包含完整的开放阅读框(ORF)546 bp、一个终止密码及含polyA信号的3′UTR;ORF编码182个氨基酸,包括信号肽(44aa),成熟肽B区(29aa)、C区(10aa)、A区(21aa)、D区(8aa)及编码70aa 的E区,二级结构为混合类型;与其他脊椎动物IGF-Ⅰb序列的序列相似度达75.8%~100%;成熟肽A、B区高度保守,C区第82位后缺失2aa, E区第131位和159位分别缺失3aa和1aa; 萨罗罗非鱼在E133位发生Ala/Pro氨基酸残基替换,与耐盐性强的莫桑比克罗非鱼和画眉罗非鱼一致,推测IGF-Ⅰb基因E区选择性剪切与3种罗非鱼耐盐性能差异有关。

     

    Abstract: Aiming at exploring the sequence differences of IGF-Ⅰ gene of Nile tilapia (Oreochromis niloticus NewGifts,ON), black-chin tilapia (Sarotherodon melanotheron,SM) and their First Generation of Hybrid (HB), investigating the relationships between the great differences of salt-resistant property among the three genotypes, we cloned partial cDNA fragments of insulin-like growth factor Ⅰ(IGF-Ⅰ) from gill extracts through rapid amplification of 3′ cDNA ends(3′RACE)methods. The results demonstrated to be the IGF-Ⅰb gene cDNAs with length of 1 076 bp,1 075 bp and 1 079 bp respectively and comprising of a stop codon, a 546 bp open reading frame (ORF) encoding a 182 amino acid peptides(aa), and 3′-untranslated regions(3′-UTR). The deduced amino acid sequence of IGF-Ⅰb precursor is composed of signal peptide, mature peptide(including conserved B, C, A and D domains consisting of 29-aa,10-aa,21-aa and 8-aa respectively)and E domain of 70aa. Results of the predicted secondary structures were typed as “mixed patterns”. The results of multiple alignments showed highly homologous with 75.8% to 100% amino acid identity. The B and A domains are highly conserved in all of the allied species. There are 2aa-deletion between No.82 and 83 sites in C domain, 3aa and 1aa-deletion next to NO.131 and No.159 site, respectively. Ala / Pro substitution occurred at No.133 of E domain of black-chin tilapia compared with ON and HB, which is identical to Oreochromis mossambicus and Oreochromis urolepis hornorum. We presumed that the differences of salt-resistant property of ON, SM and HB may be due to the alterative splicing of the IGF-Ⅰ E domain.

     

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