大口黑鲈POU1F1启动子区域SNPs对生长的影响

Effects of SNPs in POU1F1 promoter on growth traits in largemouth bass(Micropterus salmoides)

  • 摘要: 采用基因组步移技术克隆了大口黑鲈垂体特异性转录因子POU1F1启动子序列,该序列全长1 629 bp,预测存在4个八聚体转录因子1(Oct-1)结合位点和TATA框等基本转录元件,1个Homeobox转录因子结合位点和2个cAMP反应元件结合蛋白(CREB)结合位点。采用直接测序法研究发现,大口黑鲈POU1F1启动子序列的-18和-183两个位点存在SNPs,该两个突变位点只检测到A、B两种单倍型。对养殖群体进行不同单倍型的基因频率和生长关联分析,结果表明,单倍型A的等位基因频率为0.246,单倍型B的等位基因频率为0.754;群体关联分析表明,基因型为AA型和AB型的个体在体质量、体长、全长、体高和体宽等方面明显高于BB型个体,但基因型为AB型和AA型的个体之间在体质量方面没有明显差异。该研究结果为下一步进行分子标记辅助选择提供了基础。

     

    Abstract: In the present study,the promoter sequence of largemouth bass POU1F1 was cloned which is 1 629 bp in length,predicted the existence of four octamer transcription factor 1(Oct-1)binding sites,one homeobox transcription factors sites,two cAMP-responsive element binding proteins sites and a TATA box.Using directly sequencing,two nucleotides mutations were identified which were located at the -18 and -183 sites,and only two haplotypes were identified(haplotype A and haplotype B).The different genotype individuals and the mutant alleles in stochastic population(126 individuals)were examined.The frequency of A haplotype and B haplotype was 0.246 and 0.754 respectively.The population correlation analysis showed that the AA and AB genotypes have significantly correlated with BB genotype individuals’ weight,body length,full length,body depth and body width(P<0.05),but there is no significant correlation between AA genotype individuals and AB genotype individuals.Identified growth traits markers for growth traits could be implemented through marker-assisted selection(MAS),with the aim of producing rapidly growing largemouth bass.

     

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