草鱼免疫球蛋白M重链基因的克隆及表达

The sequence and expression of the immunoglobulin M heavy chain cDNA of Ctenopharyngodon idellus

  • 摘要: 用RACE-PCR方法扩增出草鱼免疫球蛋白M(immunoglobulin M, IgM) 分泌型的重链全长cDNA。其cDNA全长为1 940 nt,包含5′非编码区20 nt,3′ 非编码区189 nt,开放阅读框1 731 nt,编码576个氨基酸。序列比对分析表明草鱼IgM与鲤的相似性高达68%,与斑马鱼、斑点叉尾鮰、鳜以及大西洋鳕的相似性分别为61%、43%、33%和30%。ClustalX比对结果显示:草鱼IgM中存在半胱氨酸和色氨酸的保守位点。进化分析表明,草鱼IgM与斑马鱼的IgM聚为一枝。荧光定量PCR显示草鱼IgM的mRNA主要在头肾、中肾和脾脏中表达,表明了这三个免疫器官是IgM表达的主要场所。

     

    Abstract: The full cDNA sequence of immunoglobulin M heavy chain of grass carp (Ctenopharyngodon idellus) has been cloned using RACE-PCR. It has 1 940 nucleotides, including 5′ UTR of 20 nucleotides and 3′ UTR of 189 nucleotides. Its open reading frame has 1 731 nucleotides which encode a 576 amino acid peptide. The deduced amino acid sequence of grass carp IgM had the highest similarity with Cyprinus carpio (68%). The similarity with Danio rerio, Ictalurus punctatus, Siniperca chuatsi and Gadus morrhua was 61%,43%,33% and 30%, respectively. Clustal X analysis showed that the conserved cysteines and tryptophans exist in grass carp IgM. Phycogenetic analysis placed grass carp IgM and the putative zebrafish IgM into one seperate cluster. The results fro m real-time PCR showed that the grass carp IgM transcripts were detected mainly in lymphoid tissues such as head kidney, kidney and spleen, indicating that the y are main organs for the production of IgM.

     

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